SOME RECENT PUBLICATIONS AND PREPRINTS

• B. Chalier, N. Charon, A. Trouvé. "The fshape framework for the variability analysis of functional shapes". Foundation of Computational Mathematics (to appear), 2015 (pdf)
• M. Miller, L. Younes and A. Trouve. "Hamiltonian Systems in Computational Anatomy : 100 Years since D'Arcy Thompson". Annual Review of Biomedical Engineering 17 , 2015
• S. Arguillere, E. Trélat, A. Trouvé, L. Younes. "Multiple shape registration using constrained optimal control". arXiv:1503.07685, 2015 (pdf)
• S. Arguillere, E. Trélat, A. Trouvé, L. Younes. "Shape deformation analysis from the optimal control point of view". Journal de Mathématiques Pures et Appliquées 104 (1): 139-178, 2015 (pdf)
• S. Durrleman, M. Prastawa, N. Charon, J. Korenberg, S. Joshi, G. Gerig and A. Trouve. "Morphometry of anatomical shape complexes with dense deformations and sparse parameters". Neuroimage, 101: 35-49, 2014 (pdf)
• I. Chauvot de Beauchêne, A. Allain, N. Panel, E.Laine, A. Trouvé, P. Dubreuil and L. Tchartanov. " Hotspot Mutations in KIT Receptor Differentially Modulate Its Allosterically Coupled Conformational Dynamics: Impact on Activation and Drug Sensitivity". Plos Computational Biology 10 (16), 2014
• M. Miller, L. Younes and A. Trouve. "Diffeomorphometry and geodesic positioning systems for human anatomy". Technology 02,(36) , 2014 (pdf)
• S. Arguillere, E. Trélat, A. Trouvé, L. Younes. "Shape deformation and optimal control". ESAIM: Proceeding and Surveys 45: 300-307, 2014
• D. Tward, J. Jovicich, A. Soricelli, G. Frisoni, A. Trouvé, L. Younes, M. Miller. "Improved Reproducibility of Neuroanatomical Definitions through Diffeomorphometry and Complexity Reduction". in Machine Learning in Medical Imaging: 223-230 LNCS, 2014.
• N. Charon and A. Trouvé. "Functional currents : a new mathematical tool to model and analyse functional shapes". Journal of Mathematical Imaging and Vision 48: 413-431 , 2014.
• N. Charon and A. Trouvé. "The Varifold Representation of Nonoriented Shapes for Diffeomorphic Registration". SIAM J. Imaging Sciences 6(4): 2547-2580, 2013.
• S. Durrleman, X. Pennec, A. Trouvé, J. Braga, G. Gerig, and Nicholas Ayache. "Toward a comprehensive framework for the spatiotemporal statistical analysis of longitudinal shape data". International Journal of Computer Vision, 103: 22-59, 2013.
• A. Jorstad, D. Jacobs, and A. Trouvé. "Deformations and lighting". In Shape Perception in Human and Computer Vision, pages 133-144 Springer, 2013.
• A. Jorstad, D. Jacobs, and A. Trouvé. "A fast illumination and deformation insensitive image comparison algorithm using wavelet-based geodesics". In Computer Vision-ECCV 2012, pages 71-84. Springer, 2012.
• S. Durrleman, X. Pennec, A. Trouvé, N. Ayache, and José Braga. "Comparison of the endo- cranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration". Journal of Human Evolution, 62(1) :74-88, 2012.
• A. Trouvé and F.-X. Vialard. "Shape splines and stochastic shape evolutions : A second order point of view". Quartely of Applied Mathematics, 70 :219-251, 2012. (pdf)
• A. Trouvé and L. Younes. "Shape Spaces" in Handbook of Mathematical Imaging, p 1309--1362. Springer, 2011.
• G. Auzias, O. Colliot, J. Glaunes, M. Perrot, J.-F. Mangin, A. Trouvé, an S. Baillet. "Diffeomorphic brain registration under exhaustive sulcal constraints," IEEE Transactions of Medical Imaging , 2011. (pdf)
• S. Durrleman, P. Filard, X. Pennec, A. Trouvé, and N. Ayache, "Registration, atlas estimation and variability analysis of white matter fiber bundles modeled as currents", Neuroimage, 55(3) :1073-­1090, 2011. (pdf)
• Y. Yu, A. Trouvé, B. Chalmond, O. Renaud and S. Shorte, "Confocal bi-protocal: a new strategy for isotropic 3d live cell imaging", Journal of Microscopy, 242(1), 70-85 2011
• S. Allassonnière, Estelle Kuhn, and Alain Trouvé. "Bayesian consistent estimation in deformable models using stochastic algorithms: Aplication to medical images" Journal de la SFDS, 151(1):1-16, 2010 (pdf)
• S. Allassonnière, Estelle Kuhn, and Alain Trouvé. "Construction of Bayesian Deformable Models via Stochastic Approximation Algorithm: A Convergence Study," Bernoulli, 16(3): 641-678, 2010 (pdf)
• Stanley Durrleman, Xavier Pennec, Alain Trouvé, G. Gerig, and Nicolas Ayache. "Spatiotemporal atlas estimation for developmental delay detection in longitudinal datasets." MICCAI 2009 (pdf)
• Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicolas Ayache. "Statistical models of sets of curves and surfaces based on currents, medical image analysis." Medical Image Analysis, 13(5): 793-808 2009 (pdf)
• D.H. Holm, A. Trouvé and L. Younes "The Euler-Poincaré theory of metamorphosis", Quarterly of Applied Mathematics, 67: 661-685 2009. (pdf)
• Bertrand Le Saux, Bernard Chalmond, Yong Yu, and Alain Trouvé."Isotropic high resolution 3d confocal micro-rotation imaging for non-adherent living cells." Journal of Miscroscopy, 233(3):404-416, 2009.
• J. Ma, M.I. Miller, A. Trouvé, and L. Younes, "Bayesian template estimation in computational anatomy", NeuroImage 2008;42(1):252-61. 2008. (pdf)
• Y. Yu, A. Trouvé, J. Wang, and B. Chalmond, "An integrated statistical approach for volume reconstruction from unregistered sequential slices", Inverse Problems, 24(4) 2008. (pdf)
• O. Renaud, J. Vina, Y. Yu, C. Machu, A. Trouvé, H. Van der Voort, B. Chalmond, and S. Shorte, "High-resolution 3-d imaging of living cell in suspension using confocal axial tomography," Biotechnology Journal 3(1):53-62, 2008. (pdf)
• S. Durrleman, X. Pennec, A. Trouvé, P. Thompson and N. Ayache, "Inferring brain variability from diffeomorphic deformations of currents: an integrative approach," Medical Image Analysis, 12(5):626-637 2008. (pdf)
• S. Durrleman, X. Pennec, A. Trouvé, and N. Ayache, "Sparse approximation of currents for statistics on curves and surfaces," MICCAI 2008. (pdf)
• S. Allassonnière, Estelle Kuhn, and Alain Trouvé, "Map estimation of statistical deformable template via nonlinear mixed effect models : Deterministic and stochastic approaches," Proc. of Mathematical Foundations of Computational Anatomy 2008. (pdf)
• S. Durrleman, X. Pennec, A. Trouvé, and N. Ayache, "A forward model to build unbiased atlases from curves and surfaces," Proc. of Mathematical Foundations of Computational Anatomy 2008. (pdf)